Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR639131 Sample ID 1386
| Paper identifier | Kruesi2013condensin |
| SRP accession | SRP017635 |
| GEO accession | GSE43084 |
| Samples | SRR639131 |
| QC score | 3 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 38 Mb |
| Organism | C. elegans |
| Sample type | organism |
| Cell type | whole worm |
| Clone/Individual | stage L1 |
| Strain | N2 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | starvation | -1 day | 0 day | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 30 |
| Read depth after trimming | 11,078,595 |
| Duplication proportion | 0.35184 |
| Proportion reads mapped | 0.8462 |
| Exon/intron ratio | 1.28281 |
| Unique read proportion | 0.62933 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |