Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR639143 Sample ID 1391
| Paper identifier | Kruesi2013condensin |
| SRP accession | SRP017636 |
| GEO accession | GSE43085 |
| Samples | SRR639143 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-cap |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 22 Mb |
| Organism | C. elegans |
| Sample type | organism |
| Cell type | whole worm |
| Clone/Individual | stage embryo |
| Strain | N2 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 4 |
| Sample NRO score | 1 |
| Raw read length | 30 |
| Read depth after trimming | 20,179,419 |
| Duplication proportion | 0.84808 |
| Proportion reads mapped | 0.9288 |
| Exon/intron ratio | 2.01873 |
| Unique read proportion | 0.24722 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |