DBNascent | Samples

SRR639148 Sample ID 1396

**Data sources**
Paper identifier	Kruesi2013condensin
SRP accession	SRP017636
GEO accession	GSE43085
Samples	SRR639148

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-cap
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	47 Mb
Stranded gene read counts	TXT file
Unstranded bidirectional read counts	TXT file
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	C. elegans
Sample type	organism
Cell type	whole worm
Clone/Individual	stage L3
Strain	N2
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	tobacco acid pyrophosphatase used during library prep
Analysis notes

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	30
Read depth after trimming	55,699,708
Duplication proportion	0.8762
Proportion reads mapped	0.8856
Exon/intron ratio	2.35463
Unique read proportion	0.29588

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False