DBNascent | Samples

SRR6453429 Sample ID 911

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453429

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	51 Mb
Stranded gene read counts	TXT file	921 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	508 Kb
dREG bidirectional regions	BED file	231 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-1 hr	0 hr	1 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT1
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	98,814,535
Duplication proportion	0.90688
Proportion reads mapped	0.3808
Exon/intron ratio	2.82141
Unique read proportion	0.28985

**Bidirectionals**
Total # Tfit bidirectionals	5945
# Promoter Tfit bidirectionals	1239
# Intronic Tfit bidirectionals	2395
# Intergenic Tfit bidirectionals	1410
Total # dREG bidirectionals	5372
# Promoter dREG bidirectionals	2259
# Intronic dREG bidirectionals	1525
# Intergenic dREG bidirectionals	1286
Part of Tfit master merge?	True
Part of dREG master merge?	True