DBNascent | Samples

SRR6453431 Sample ID 913

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453431

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	70 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	749 Kb
dREG bidirectional regions	BED file	410 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-7 hr	0 hr	7 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT7
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	134,883,850
Duplication proportion	0.88205
Proportion reads mapped	0.3787
Exon/intron ratio	2.54789
Unique read proportion	0.38831

**Bidirectionals**
Total # Tfit bidirectionals	8753
# Promoter Tfit bidirectionals	2086
# Intronic Tfit bidirectionals	3197
# Intergenic Tfit bidirectionals	2127
Total # dREG bidirectionals	9544
# Promoter dREG bidirectionals	3504
# Intronic dREG bidirectionals	2823
# Intergenic dREG bidirectionals	2444
Part of Tfit master merge?	True
Part of dREG master merge?	True