DBNascent | Samples

SRR6453432 Sample ID 914

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453432

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	87 Mb
Stranded gene read counts	TXT file	925 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	981 Kb
dREG bidirectional regions	BED file	590 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-10 hr	0 hr	10 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT10
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	134,223,305
Duplication proportion	0.86115
Proportion reads mapped	0.4477
Exon/intron ratio	2.34656
Unique read proportion	0.45673

**Bidirectionals**
Total # Tfit bidirectionals	11449
# Promoter Tfit bidirectionals	3101
# Intronic Tfit bidirectionals	4015
# Intergenic Tfit bidirectionals	2972
Total # dREG bidirectionals	13718
# Promoter dREG bidirectionals	4804
# Intronic dREG bidirectionals	4204
# Intergenic dREG bidirectionals	3660
Part of Tfit master merge?	True
Part of dREG master merge?	True