DBNascent | Samples

SRR6453433 Sample ID 915

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453433

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	372 Kb
dREG bidirectional regions	BED file	140 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-13 hr	-1 hr	12 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT13
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	60,307,619
Duplication proportion	0.74492
Proportion reads mapped	0.2495
Exon/intron ratio	2.84942
Unique read proportion	0.37101

**Bidirectionals**
Total # Tfit bidirectionals	4380
# Promoter Tfit bidirectionals	852
# Intronic Tfit bidirectionals	1800
# Intergenic Tfit bidirectionals	729
Total # dREG bidirectionals	3260
# Promoter dREG bidirectionals	1146
# Intronic dREG bidirectionals	1048
# Intergenic dREG bidirectionals	743
Part of Tfit master merge?	True
Part of dREG master merge?	True