DBNascent | Samples

SRR6453434 Sample ID 916

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453434

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	591 Kb
dREG bidirectional regions	BED file	257 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-16 hr	-4 hr	12 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT16
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	132,323,329
Duplication proportion	0.93028
Proportion reads mapped	0.4227
Exon/intron ratio	2.71225
Unique read proportion	0.27754

**Bidirectionals**
Total # Tfit bidirectionals	6908
# Promoter Tfit bidirectionals	1387
# Intronic Tfit bidirectionals	2768
# Intergenic Tfit bidirectionals	1762
Total # dREG bidirectionals	5993
# Promoter dREG bidirectionals	2363
# Intronic dREG bidirectionals	1664
# Intergenic dREG bidirectionals	1582
Part of Tfit master merge?	True
Part of dREG master merge?	True