DBNascent | Samples

SRR6453435 Sample ID 917

**Data sources**
Paper identifier	Guan2018diet
SRP accession	SRP128559
GEO accession	GSE108878
Samples	SRR6453435

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	True
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	811 Kb
dREG bidirectional regions	BED file	462 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain	C57BL/6J
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	light cycle	-19 hr	-7 hr	12 hr
treatment	high fat diet (60% kcal% fat)	-12 wk	0 wk	12 day

**Extended notes**
Pipeline info and software versions
Sample notes	12 hour light/dark cycle; ZT19
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	2
Raw read length	50
Read depth after trimming	132,059,187
Duplication proportion	0.84301
Proportion reads mapped	0.3969
Exon/intron ratio	2.4355
Unique read proportion	0.458

**Bidirectionals**
Total # Tfit bidirectionals	9500
# Promoter Tfit bidirectionals	2114
# Intronic Tfit bidirectionals	3502
# Intergenic Tfit bidirectionals	2682
Total # dREG bidirectionals	10760
# Promoter dREG bidirectionals	3441
# Intronic dREG bidirectionals	3550
# Intergenic dREG bidirectionals	3035
Part of Tfit master merge?	True
Part of dREG master merge?	True