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SRR6453436 Sample ID 918
| Paper identifier | Guan2018diet |
| SRP accession | SRP128559 |
| GEO accession | GSE108878 |
| Samples | SRR6453436 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | True |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 72 Mb |
| Stranded gene read counts | TXT file | 920 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 676 Kb |
| dREG bidirectional regions | BED file | 375 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | C57BL/6J |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | light cycle | -22 hr | -10 hr | 12 hr |
| treatment | high fat diet (60% kcal% fat) | -12 wk | 0 wk | 12 day |
| Pipeline info and software versions | |
| Sample notes | 12 hour light/dark cycle; ZT22 |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 117,355,439 |
| Duplication proportion | 0.81063 |
| Proportion reads mapped | 0.333 |
| Exon/intron ratio | 2.9597 |
| Unique read proportion | 0.43343 |
| Total # Tfit bidirectionals | 7926 |
| # Promoter Tfit bidirectionals | 1779 |
| # Intronic Tfit bidirectionals | 3077 |
| # Intergenic Tfit bidirectionals | 1840 |
| Total # dREG bidirectionals | 8713 |
| # Promoter dREG bidirectionals | 2878 |
| # Intronic dREG bidirectionals | 2871 |
| # Intergenic dREG bidirectionals | 2194 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |