DBNascent | Samples

SRR6498837 Sample ID 2663

**Data sources**
Paper identifier	Weissmiller2019inhibition
SRP accession	SRP131080
GEO accession	GSE109310
Samples	SRR6498837

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	282 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	5 Mb
dREG bidirectional regions	BED file	2 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	G401
Clone/Individual
Strain
Genotype	dox-inducible Snf5 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	75
Read depth after trimming	114,007,236
Duplication proportion	0.56606
Proportion reads mapped	0.8644
Exon/intron ratio	2.73179
Unique read proportion	0.71852

**Bidirectionals**
Total # Tfit bidirectionals	60824
# Promoter Tfit bidirectionals	14595
# Intronic Tfit bidirectionals	24423
# Intergenic Tfit bidirectionals	20917
Total # dREG bidirectionals	56141
# Promoter dREG bidirectionals	9032
# Intronic dREG bidirectionals	25537
# Intergenic dREG bidirectionals	20075
Part of Tfit master merge?	True
Part of dREG master merge?	True