DBNascent | Samples

SRR6498838 Sample ID 2664

**Data sources**
Paper identifier	Weissmiller2019inhibition
SRP accession	SRP131080
GEO accession	GSE109310
Samples	SRR6498838

**Technical details**
QC score	3
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	180 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	G401
Clone/Individual
Strain
Genotype	dox-inducible Snf5 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	doxycycline (1 microg/mL)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	75
Read depth after trimming	118,010,332
Duplication proportion	0.77215
Proportion reads mapped	0.9004
Exon/intron ratio	2.38626
Unique read proportion	0.6959

**Bidirectionals**
Total # Tfit bidirectionals	33220
# Promoter Tfit bidirectionals	10791
# Intronic Tfit bidirectionals	13568
# Intergenic Tfit bidirectionals	8483
Total # dREG bidirectionals	29551
# Promoter dREG bidirectionals	8223
# Intronic dREG bidirectionals	12734
# Intergenic dREG bidirectionals	8163
Part of Tfit master merge?	True
Part of dREG master merge?	True