Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR6498838 Sample ID 2664
| Paper identifier | Weissmiller2019inhibition |
| SRP accession | SRP131080 |
| GEO accession | GSE109310 |
| Samples | SRR6498838 |
| QC score | 3 |
| Replicate | 3 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | |
| Stranded gene read counts | TXT file | |
| Unstranded bidirectional read counts | TXT file | |
| Tfit bidirectional regions | BED file | |
| dREG bidirectional regions | BED file | |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | G401 |
| Clone/Individual | |
| Strain | |
| Genotype | dox-inducible Snf5 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | doxycycline (1 microg/mL) | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 3 |
| Sample NRO score | 1 |
| Raw read length | 75 |
| Read depth after trimming | 118,010,332 |
| Duplication proportion | 0.77215 |
| Proportion reads mapped | 0.9004 |
| Exon/intron ratio | 2.38626 |
| Unique read proportion | 0.6959 |
| Total # Tfit bidirectionals | 33220 |
| # Promoter Tfit bidirectionals | 10791 |
| # Intronic Tfit bidirectionals | 13568 |
| # Intergenic Tfit bidirectionals | 8483 |
| Total # dREG bidirectionals | 29551 |
| # Promoter dREG bidirectionals | 8223 |
| # Intronic dREG bidirectionals | 12734 |
| # Intergenic dREG bidirectionals | 8163 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |