DBNascent | Samples

SRR6508247 Sample ID 412

**Data sources**
Paper identifier	Cardamone2018mitochondrial
SRP accession	SRP074240
GEO accession	GSE80990
Samples	SRR6508247

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	912 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	465 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	42,824,079
Duplication proportion	0.74204
Proportion reads mapped	0.7363
Exon/intron ratio	3.19982
Unique read proportion	0.28145

**Bidirectionals**
Total # Tfit bidirectionals	15815
# Promoter Tfit bidirectionals	6908
# Intronic Tfit bidirectionals	4775
# Intergenic Tfit bidirectionals	2485
Total # dREG bidirectionals	10786
# Promoter dREG bidirectionals	5174
# Intronic dREG bidirectionals	2764
# Intergenic dREG bidirectionals	2010
Part of Tfit master merge?	True
Part of dREG master merge?	True