DBNascent | Samples

SRR6508248 Sample ID 413

**Data sources**
Paper identifier	Cardamone2018mitochondrial
SRP accession	SRP074240
GEO accession	GSE80990
Samples	SRR6508248

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	60 Mb
Stranded gene read counts	TXT file	913 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	425 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	FCCP	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	35,264,832
Duplication proportion	0.66746
Proportion reads mapped	0.7609
Exon/intron ratio	2.78947
Unique read proportion	0.39633

**Bidirectionals**
Total # Tfit bidirectionals	14740
# Promoter Tfit bidirectionals	5688
# Intronic Tfit bidirectionals	5062
# Intergenic Tfit bidirectionals	2484
Total # dREG bidirectionals	9846
# Promoter dREG bidirectionals	4100
# Intronic dREG bidirectionals	2861
# Intergenic dREG bidirectionals	2115
Part of Tfit master merge?	True
Part of dREG master merge?	True