Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR6508249 Sample ID 414
| Paper identifier | Cardamone2018mitochondrial |
| SRP accession | SRP074240 |
| GEO accession | GSE80990 |
| Samples | SRR6508249 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 36 Mb |
| Stranded gene read counts | TXT file | 914 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 552 Kb |
| dREG bidirectional regions | BED file | 267 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | 3T3-L1 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct | siRNA Gps2 |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 4 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 30,188,118 |
| Duplication proportion | 0.868 |
| Proportion reads mapped | 0.7831 |
| Exon/intron ratio | 4.17079 |
| Unique read proportion | 0.2468 |
| Total # Tfit bidirectionals | 6420 |
| # Promoter Tfit bidirectionals | 1036 |
| # Intronic Tfit bidirectionals | 2965 |
| # Intergenic Tfit bidirectionals | 847 |
| Total # dREG bidirectionals | 6219 |
| # Promoter dREG bidirectionals | 786 |
| # Intronic dREG bidirectionals | 2596 |
| # Intergenic dREG bidirectionals | 1331 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |