DBNascent | Samples

SRR6508249 Sample ID 414

**Data sources**
Paper identifier	Cardamone2018mitochondrial
SRP accession	SRP074240
GEO accession	GSE80990
Samples	SRR6508249

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	36 Mb
Stranded gene read counts	TXT file	914 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	552 Kb
dREG bidirectional regions	BED file	267 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct	siRNA Gps2

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	50
Read depth after trimming	30,188,118
Duplication proportion	0.868
Proportion reads mapped	0.7831
Exon/intron ratio	4.17079
Unique read proportion	0.2468

**Bidirectionals**
Total # Tfit bidirectionals	6420
# Promoter Tfit bidirectionals	1036
# Intronic Tfit bidirectionals	2965
# Intergenic Tfit bidirectionals	847
Total # dREG bidirectionals	6219
# Promoter dREG bidirectionals	786
# Intronic dREG bidirectionals	2596
# Intergenic dREG bidirectionals	1331
Part of Tfit master merge?	True
Part of dREG master merge?	True