DBNascent | Samples

SRR6508250 Sample ID 415

**Data sources**
Paper identifier	Cardamone2018mitochondrial
SRP accession	SRP074240
GEO accession	GSE80990
Samples	SRR6508250

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	48 Mb
Stranded gene read counts	TXT file	917 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	764 Kb
dREG bidirectional regions	BED file	364 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	3T3-L1
Clone/Individual
Strain
Genotype
Construct	siRNA Gps2

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	FCCP	-3 hr	0 hr	3 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	50
Read depth after trimming	41,018,170
Duplication proportion	0.86017
Proportion reads mapped	0.7819
Exon/intron ratio	3.37481
Unique read proportion	0.31006

**Bidirectionals**
Total # Tfit bidirectionals	8875
# Promoter Tfit bidirectionals	1212
# Intronic Tfit bidirectionals	4640
# Intergenic Tfit bidirectionals	1228
Total # dREG bidirectionals	8474
# Promoter dREG bidirectionals	978
# Intronic dREG bidirectionals	4108
# Intergenic dREG bidirectionals	1929
Part of Tfit master merge?	True
Part of dREG master merge?	True