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SRR6727944 Sample ID 1364
| Paper identifier | Kristjansdottir2020population |
| SRP accession | SRP132893 |
| GEO accession | GSE110638 |
| Samples | SRR6727944 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 132 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | lymphoblast |
| Clone/Individual | individual GM18520 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Replicate info not clear - GEO metadata doesn't match paper - I think they screwed up when entering somewhere |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 16 |
| Read depth after trimming | 34,241,160 |
| Duplication proportion | 0.41083 |
| Proportion reads mapped | 0.926 |
| Exon/intron ratio | 4.40756 |
| Unique read proportion | 0.7667 |
| Total # Tfit bidirectionals | 39138 |
| # Promoter Tfit bidirectionals | 16741 |
| # Intronic Tfit bidirectionals | 14776 |
| # Intergenic Tfit bidirectionals | 7958 |
| Total # dREG bidirectionals | 28639 |
| # Promoter dREG bidirectionals | 8299 |
| # Intronic dREG bidirectionals | 12719 |
| # Intergenic dREG bidirectionals | 6586 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |