DBNascent | Samples

SRR6727949 Sample ID 1369

**Data sources**
Paper identifier	Kristjansdottir2020population
SRP accession	SRP132893
GEO accession	GSE110638
Samples	SRR6727949

**Technical details**
QC score	2
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	84 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	lymphoblast
Clone/Individual	individual GM18522
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate info not clear - GEO metadata doesn't match paper - I think they screwed up when entering somewhere
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	16
Read depth after trimming	18,991,173
Duplication proportion	0.24601
Proportion reads mapped	0.8151
Exon/intron ratio	4.40684
Unique read proportion	0.79202

**Bidirectionals**
Total # Tfit bidirectionals	32630
# Promoter Tfit bidirectionals	13523
# Intronic Tfit bidirectionals	13473
# Intergenic Tfit bidirectionals	6093
Total # dREG bidirectionals	23960
# Promoter dREG bidirectionals	8781
# Intronic dREG bidirectionals	10344
# Intergenic dREG bidirectionals	4502
Part of Tfit master merge?	False
Part of dREG master merge?	False