DBNascent | Samples

SRR6727952 Sample ID 1372

**Data sources**
Paper identifier	Kristjansdottir2020population
SRP accession	SRP132893
GEO accession	GSE110638
Samples	SRR6727952

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	85 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1000 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	lymphoblast
Clone/Individual	individual GM19193
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	16
Read depth after trimming	18,681,261
Duplication proportion	0.30176
Proportion reads mapped	0.9176
Exon/intron ratio	5.072
Unique read proportion	0.74994

**Bidirectionals**
Total # Tfit bidirectionals	32691
# Promoter Tfit bidirectionals	14029
# Intronic Tfit bidirectionals	12864
# Intergenic Tfit bidirectionals	5960
Total # dREG bidirectionals	22840
# Promoter dREG bidirectionals	7810
# Intronic dREG bidirectionals	9433
# Intergenic dREG bidirectionals	4551
Part of Tfit master merge?	False
Part of dREG master merge?	False