Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR6727958 Sample ID 1378
| Paper identifier | Kristjansdottir2020population |
| SRP accession | SRP132893 |
| GEO accession | GSE110638 |
| Samples | SRR6727958 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 95 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | lymphoblast |
| Clone/Individual | individual GM19239 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 16 |
| Read depth after trimming | 20,774,957 |
| Duplication proportion | 0.27574 |
| Proportion reads mapped | 0.8907 |
| Exon/intron ratio | 4.6165 |
| Unique read proportion | 0.78357 |
| Total # Tfit bidirectionals | 34122 |
| # Promoter Tfit bidirectionals | 14438 |
| # Intronic Tfit bidirectionals | 13742 |
| # Intergenic Tfit bidirectionals | 6435 |
| Total # dREG bidirectionals | 25787 |
| # Promoter dREG bidirectionals | 8720 |
| # Intronic dREG bidirectionals | 11323 |
| # Intergenic dREG bidirectionals | 5110 |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |