DBNascent | Samples

SRR6782092 Sample ID 1922

**Data sources**
Paper identifier	Nelson2018ppar
SRP accession	SRP133563
GEO accession	GSE111103
Samples	SRR6782092

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	136 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate relationship is unknown
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	147,467,903
Duplication proportion	0.65278
Proportion reads mapped	0.3836
Exon/intron ratio	1.8414
Unique read proportion	0.56625

**Bidirectionals**
Total # Tfit bidirectionals	30640
# Promoter Tfit bidirectionals	7702
# Intronic Tfit bidirectionals	10737
# Intergenic Tfit bidirectionals	9476
Total # dREG bidirectionals	29233
# Promoter dREG bidirectionals	6892
# Intronic dREG bidirectionals	12254
# Intergenic dREG bidirectionals	8491
Part of Tfit master merge?	True
Part of dREG master merge?	True