DBNascent | Samples

SRR6782093 Sample ID 1923

**Data sources**
Paper identifier	Nelson2018ppar
SRP accession	SRP133563
GEO accession	GSE111103
Samples	SRR6782093

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	70 Mb
Stranded gene read counts	TXT file	915 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	631 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate relationship is unknown
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	100
Read depth after trimming	54,599,436
Duplication proportion	0.45503
Proportion reads mapped	0.3222
Exon/intron ratio	1.41942
Unique read proportion	0.62692

**Bidirectionals**
Total # Tfit bidirectionals	21870
# Promoter Tfit bidirectionals	5387
# Intronic Tfit bidirectionals	8619
# Intergenic Tfit bidirectionals	6008
Total # dREG bidirectionals	14657
# Promoter dREG bidirectionals	4542
# Intronic dREG bidirectionals	5364
# Intergenic dREG bidirectionals	3931
Part of Tfit master merge?	True
Part of dREG master merge?	True