DBNascent | Samples

SRR6782094 Sample ID 1924

**Data sources**
Paper identifier	Nelson2018ppar
SRP accession	SRP133563
GEO accession	GSE111103
Samples	SRR6782094

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	62 Mb
Stranded gene read counts	TXT file	914 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	571 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57BL/6
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	rosiglitazone (1 microM)	-24 hr	0 hr	1 day

**Extended notes**
Pipeline info and software versions
Sample notes	Replicate relationship is unknown
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	100
Read depth after trimming	65,118,397
Duplication proportion	0.52124
Proportion reads mapped	0.2596
Exon/intron ratio	1.35868
Unique read proportion	0.56416

**Bidirectionals**
Total # Tfit bidirectionals	20048
# Promoter Tfit bidirectionals	5205
# Intronic Tfit bidirectionals	7639
# Intergenic Tfit bidirectionals	5356
Total # dREG bidirectionals	13249
# Promoter dREG bidirectionals	4457
# Intronic dREG bidirectionals	4664
# Intergenic dREG bidirectionals	3346
Part of Tfit master merge?	True
Part of dREG master merge?	True