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SRR6782096 Sample ID 1926
| Paper identifier | Nelson2018ppar |
| SRP accession | SRP133563 |
| GEO accession | GSE111103 |
| Samples | SRR6782096 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 52 Mb |
| Stranded gene read counts | TXT file | 913 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 480 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | peritoneal macrophage |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| vehicle | DMSO | -24 hr | 0 hr | 1 day |
| Pipeline info and software versions | |
| Sample notes | Replicate relationship is unknown |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 61,657,098 |
| Duplication proportion | 0.62412 |
| Proportion reads mapped | 0.2907 |
| Exon/intron ratio | 2.1227 |
| Unique read proportion | 0.4196 |
| Total # Tfit bidirectionals | 16026 |
| # Promoter Tfit bidirectionals | 4570 |
| # Intronic Tfit bidirectionals | 5913 |
| # Intergenic Tfit bidirectionals | 4001 |
| Total # dREG bidirectionals | 11161 |
| # Promoter dREG bidirectionals | 4270 |
| # Intronic dREG bidirectionals | 3525 |
| # Intergenic dREG bidirectionals | 2543 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |