DBNascent | Samples

SRR6789176 Sample ID 1075

**Data sources**
Paper identifier	Jiang2018multi
SRP accession	SRP133625
GEO accession	GSE111222
Samples	SRR6789176

**Technical details**
QC score	1
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	244 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file	647 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HCT116
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Unstranded; Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	54,221,183
Duplication proportion	0.33879
Proportion reads mapped	0.9602
Exon/intron ratio	3.27425
Unique read proportion	0.761

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	14994
# Promoter dREG bidirectionals	3932
# Intronic dREG bidirectionals	4243
# Intergenic dREG bidirectionals	6406
Part of Tfit master merge?	False
Part of dREG master merge?	False