DBNascent | Samples

SRR6794629 Sample ID 2535

**Data sources**
Paper identifier	Vian2018energetics
SRP accession	SRP105082
GEO accession	GSE98119
Samples	SRR6794629

**Technical details**
QC score	2
Replicate	2
Protocol	RNA-seq variant
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	220 Mb
Stranded gene read counts	TXT file	926 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file
dREG bidirectional regions	BED file
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	PCT 7134
Clone/Individual
Strain
Genotype	SA -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	ChrRNA-seq
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	35
Read depth after trimming	100,811,936
Duplication proportion	0.61671
Proportion reads mapped	0.8594
Exon/intron ratio	5.56522
Unique read proportion	0.70931

**Bidirectionals**
Total # Tfit bidirectionals	None
# Promoter Tfit bidirectionals	None
# Intronic Tfit bidirectionals	None
# Intergenic Tfit bidirectionals	None
Total # dREG bidirectionals	None
# Promoter dREG bidirectionals	None
# Intronic dREG bidirectionals	None
# Intergenic dREG bidirectionals	None
Part of Tfit master merge?	False
Part of dREG master merge?	False