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SRR6794629 Sample ID 2535
| Paper identifier | Vian2018energetics |
| SRP accession | SRP105082 |
| GEO accession | GSE98119 |
| Samples | SRR6794629 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | RNA-seq variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 220 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | PCT 7134 |
| Clone/Individual | |
| Strain | |
| Genotype | SA -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | ChrRNA-seq |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 35 |
| Read depth after trimming | 100,811,936 |
| Duplication proportion | 0.61671 |
| Proportion reads mapped | 0.8594 |
| Exon/intron ratio | 5.56522 |
| Unique read proportion | 0.70931 |
| Total # Tfit bidirectionals | None |
| # Promoter Tfit bidirectionals | None |
| # Intronic Tfit bidirectionals | None |
| # Intergenic Tfit bidirectionals | None |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | False |
| Part of dREG master merge? | False |