DBNascent | Samples

SRR6808881 Sample ID 2627

**Data sources**
Paper identifier	Wang2018nascent
SRP accession	SRP134007
GEO accession	GSE111447
Samples	SRR6808881

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	105 Mb
Stranded gene read counts	TXT file	924 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	849 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain
Genotype	HDAC3 +/+; Alb-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	41,744,961
Duplication proportion	0.39529
Proportion reads mapped	0.6748
Exon/intron ratio	3.06853
Unique read proportion	0.72159

**Bidirectionals**
Total # Tfit bidirectionals	20521
# Promoter Tfit bidirectionals	6550
# Intronic Tfit bidirectionals	7752
# Intergenic Tfit bidirectionals	4176
Total # dREG bidirectionals	19662
# Promoter dREG bidirectionals	7192
# Intronic dREG bidirectionals	6965
# Intergenic dREG bidirectionals	3916
Part of Tfit master merge?	True
Part of dREG master merge?	True