Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR6808882 Sample ID 2628
| Paper identifier | Wang2018nascent |
| SRP accession | SRP134007 |
| GEO accession | GSE111447 |
| Samples | SRR6808882 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 132 Mb |
| Stranded gene read counts | TXT file | 927 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 978 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | |
| Genotype | HDAC3 +/+; Alb-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 52,420,229 |
| Duplication proportion | 0.42431 |
| Proportion reads mapped | 0.7237 |
| Exon/intron ratio | 3.38536 |
| Unique read proportion | 0.72278 |
| Total # Tfit bidirectionals | 23414 |
| # Promoter Tfit bidirectionals | 7821 |
| # Intronic Tfit bidirectionals | 8561 |
| # Intergenic Tfit bidirectionals | 4766 |
| Total # dREG bidirectionals | 22567 |
| # Promoter dREG bidirectionals | 7186 |
| # Intronic dREG bidirectionals | 8368 |
| # Intergenic dREG bidirectionals | 4806 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |