DBNascent | Samples

SRR6808883 Sample ID 2629

**Data sources**
Paper identifier	Wang2018nascent
SRP accession	SRP134007
GEO accession	GSE111447
Samples	SRR6808883

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	120 Mb
Stranded gene read counts	TXT file	927 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	1021 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	tissue
Cell type	liver
Clone/Individual
Strain
Genotype	HDAC3 fl/-; Alb-Cre
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	51
Read depth after trimming	46,981,316
Duplication proportion	0.39402
Proportion reads mapped	0.6942
Exon/intron ratio	3.14405
Unique read proportion	0.73462

**Bidirectionals**
Total # Tfit bidirectionals	24178
# Promoter Tfit bidirectionals	7668
# Intronic Tfit bidirectionals	8994
# Intergenic Tfit bidirectionals	5404
Total # dREG bidirectionals	23631
# Promoter dREG bidirectionals	8103
# Intronic dREG bidirectionals	8770
# Intergenic dREG bidirectionals	5100
Part of Tfit master merge?	True
Part of dREG master merge?	True