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SRR6808883 Sample ID 2629
| Paper identifier | Wang2018nascent |
| SRP accession | SRP134007 |
| GEO accession | GSE111447 |
| Samples | SRR6808883 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 120 Mb |
| Stranded gene read counts | TXT file | 927 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1021 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | tissue |
| Cell type | liver |
| Clone/Individual | |
| Strain | |
| Genotype | HDAC3 fl/-; Alb-Cre |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 51 |
| Read depth after trimming | 46,981,316 |
| Duplication proportion | 0.39402 |
| Proportion reads mapped | 0.6942 |
| Exon/intron ratio | 3.14405 |
| Unique read proportion | 0.73462 |
| Total # Tfit bidirectionals | 24178 |
| # Promoter Tfit bidirectionals | 7668 |
| # Intronic Tfit bidirectionals | 8994 |
| # Intergenic Tfit bidirectionals | 5404 |
| Total # dREG bidirectionals | 23631 |
| # Promoter dREG bidirectionals | 8103 |
| # Intronic dREG bidirectionals | 8770 |
| # Intergenic dREG bidirectionals | 5100 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |