DBNascent | Samples

SRR6825351 Sample ID 288

**Data sources**
Paper identifier	Bonelt2019precocious
SRP accession	SRP134925
GEO accession	GSE111692
Samples	SRR6825351

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	47 Mb
Stranded gene read counts	TXT file	914 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	426 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	pro B cell
Clone/Individual
Strain	C57BL/6
Genotype	Rag2 -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	cell sorting CD19+	None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	30,456,602
Duplication proportion	0.58959
Proportion reads mapped	0.5307
Exon/intron ratio	4.18552
Unique read proportion	0.44487

**Bidirectionals**
Total # Tfit bidirectionals	13819
# Promoter Tfit bidirectionals	5980
# Intronic Tfit bidirectionals	4707
# Intergenic Tfit bidirectionals	989
Total # dREG bidirectionals	9878
# Promoter dREG bidirectionals	5261
# Intronic dREG bidirectionals	2410
# Intergenic dREG bidirectionals	710
Part of Tfit master merge?	True
Part of dREG master merge?	True