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SRR6825351 Sample ID 288
| Paper identifier | Bonelt2019precocious |
| SRP accession | SRP134925 |
| GEO accession | GSE111692 |
| Samples | SRR6825351 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 47 Mb |
| Stranded gene read counts | TXT file | 914 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 1 Mb |
| dREG bidirectional regions | BED file | 426 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | primary cell |
| Cell type | pro B cell |
| Clone/Individual | |
| Strain | C57BL/6 |
| Genotype | Rag2 -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | cell sorting CD19+ | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 2 |
| Raw read length | 50 |
| Read depth after trimming | 30,456,602 |
| Duplication proportion | 0.58959 |
| Proportion reads mapped | 0.5307 |
| Exon/intron ratio | 4.18552 |
| Unique read proportion | 0.44487 |
| Total # Tfit bidirectionals | 13819 |
| # Promoter Tfit bidirectionals | 5980 |
| # Intronic Tfit bidirectionals | 4707 |
| # Intergenic Tfit bidirectionals | 989 |
| Total # dREG bidirectionals | 9878 |
| # Promoter dREG bidirectionals | 5261 |
| # Intronic dREG bidirectionals | 2410 |
| # Intergenic dREG bidirectionals | 710 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |