DBNascent | Samples

SRR6837047 Sample ID 821

**Data sources**
Paper identifier	Fonseca2019diverse
SRP accession	SRP135713
GEO accession	GSE111855
Samples	SRR6837047

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	41 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	553 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57Bl/6EiJ
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	PBS	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	12,777,826
Duplication proportion	0.33688
Proportion reads mapped	0.6694
Exon/intron ratio	1.74775
Unique read proportion	0.6523

**Bidirectionals**
Total # Tfit bidirectionals	15816
# Promoter Tfit bidirectionals	5542
# Intronic Tfit bidirectionals	5289
# Intergenic Tfit bidirectionals	3616
Total # dREG bidirectionals	12849
# Promoter dREG bidirectionals	5556
# Intronic dREG bidirectionals	3593
# Intergenic dREG bidirectionals	2764
Part of Tfit master merge?	True
Part of dREG master merge?	True