DBNascent | Samples

SRR6837048 Sample ID 822

**Data sources**
Paper identifier	Fonseca2019diverse
SRP accession	SRP135713
GEO accession	GSE111855
Samples	SRR6837048

**Technical details**
QC score	3
Replicate	2
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	42 Mb
Stranded gene read counts	TXT file	908 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	568 Kb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	primary cell
Cell type	peritoneal macrophage
Clone/Individual
Strain	C57Bl/6EiJ
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	PBS	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	1
Raw read length	50
Read depth after trimming	13,728,211
Duplication proportion	0.37772
Proportion reads mapped	0.6591
Exon/intron ratio	1.7619
Unique read proportion	0.61645

**Bidirectionals**
Total # Tfit bidirectionals	16587
# Promoter Tfit bidirectionals	5610
# Intronic Tfit bidirectionals	5844
# Intergenic Tfit bidirectionals	3758
Total # dREG bidirectionals	13208
# Promoter dREG bidirectionals	5678
# Intronic dREG bidirectionals	3675
# Intergenic dREG bidirectionals	2890
Part of Tfit master merge?	True
Part of dREG master merge?	True