DBNascent | Samples

SRR6904127 Sample ID 166

**Data sources**
Paper identifier	Aprile-garcia2019nascent
SRP accession	SRP136551
GEO accession	GSE112379
Samples	SRR6904127

**Technical details**
QC score	2
Replicate	3
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	71 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	931 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HEK293T Flp-In
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	States in notes that cycloheximide and NSC624206 were used as pretreatment for heat shock, but based on paper results section this seems to not be the case for the PRO-seq samples
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	2
Raw read length	50
Read depth after trimming	16,302,394
Duplication proportion	0.34444
Proportion reads mapped	0.8937
Exon/intron ratio	4.36601
Unique read proportion	0.67199

**Bidirectionals**
Total # Tfit bidirectionals	28700
# Promoter Tfit bidirectionals	14705
# Intronic Tfit bidirectionals	10705
# Intergenic Tfit bidirectionals	4091
Total # dREG bidirectionals	21420
# Promoter dREG bidirectionals	11219
# Intronic dREG bidirectionals	7459
# Intergenic dREG bidirectionals	3207
Part of Tfit master merge?	True
Part of dREG master merge?	True