DBNascent | Samples

SRR7010982 Sample ID 774

**Data sources**
Paper identifier	Fei2018ndf
SRP accession	SRP131467
GEO accession	GSE109690
Samples	SRR7010982

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	168 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	32
Read depth after trimming	63,609,967
Duplication proportion	0.51336
Proportion reads mapped	0.8748
Exon/intron ratio	2.84318
Unique read proportion	0.64527

**Bidirectionals**
Total # Tfit bidirectionals	36880
# Promoter Tfit bidirectionals	9836
# Intronic Tfit bidirectionals	16754
# Intergenic Tfit bidirectionals	10017
Total # dREG bidirectionals	33156
# Promoter dREG bidirectionals	8572
# Intronic dREG bidirectionals	15422
# Intergenic dREG bidirectionals	9082
Part of Tfit master merge?	True
Part of dREG master merge?	True