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SRR7010983 Sample ID 775
| Paper identifier | Fei2018ndf |
| SRP accession | SRP131467 |
| GEO accession | GSE109690 |
| Samples | SRR7010983 |
| QC score | 2 |
| Replicate | 1 |
| Protocol | GRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 192 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | cell line |
| Cell type | HeLa |
| Clone/Individual | |
| Strain | |
| Genotype | hNDF -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 32 |
| Read depth after trimming | 76,150,673 |
| Duplication proportion | 0.53629 |
| Proportion reads mapped | 0.8812 |
| Exon/intron ratio | 2.9507 |
| Unique read proportion | 0.64316 |
| Total # Tfit bidirectionals | 36270 |
| # Promoter Tfit bidirectionals | 10056 |
| # Intronic Tfit bidirectionals | 16237 |
| # Intergenic Tfit bidirectionals | 9775 |
| Total # dREG bidirectionals | 34853 |
| # Promoter dREG bidirectionals | 8609 |
| # Intronic dREG bidirectionals | 16308 |
| # Intergenic dREG bidirectionals | 9837 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |