DBNascent | Samples

SRR7010983 Sample ID 775

**Data sources**
Paper identifier	Fei2018ndf
SRP accession	SRP131467
GEO accession	GSE109690
Samples	SRR7010983

**Technical details**
QC score	2
Replicate	1
Protocol	GRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	192 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	HeLa
Clone/Individual
Strain
Genotype	hNDF -/-
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	32
Read depth after trimming	76,150,673
Duplication proportion	0.53629
Proportion reads mapped	0.8812
Exon/intron ratio	2.9507
Unique read proportion	0.64316

**Bidirectionals**
Total # Tfit bidirectionals	36270
# Promoter Tfit bidirectionals	10056
# Intronic Tfit bidirectionals	16237
# Intergenic Tfit bidirectionals	9775
Total # dREG bidirectionals	34853
# Promoter dREG bidirectionals	8609
# Intronic dREG bidirectionals	16308
# Intergenic dREG bidirectionals	9837
Part of Tfit master merge?	True
Part of dREG master merge?	True