DBNascent | Samples

SRR7041686 Sample ID 2018

**Data sources**
Paper identifier	Parida2019nucleotide
SRP accession	SRP141182
GEO accession	GSE113394
Samples	SRR7041686

**Technical details**
QC score	2
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	170 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	874 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	foreskin fibroblast
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	DMSO (0.1%)	-1 hr	0 hr	1 hr
vehicle	Mock infection	-4 hr	0 hr	4 hr

**Extended notes**
Pipeline info and software versions
Sample notes	Control for HCMV Strain TB40/E
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	151
Read depth after trimming	63,933,220
Duplication proportion	0.51222
Proportion reads mapped	0.7804
Exon/intron ratio	2.40458
Unique read proportion	0.52697

**Bidirectionals**
Total # Tfit bidirectionals	27409
# Promoter Tfit bidirectionals	12935
# Intronic Tfit bidirectionals	9718
# Intergenic Tfit bidirectionals	4780
Total # dREG bidirectionals	20152
# Promoter dREG bidirectionals	8654
# Intronic dREG bidirectionals	8020
# Intergenic dREG bidirectionals	3528
Part of Tfit master merge?	True
Part of dREG master merge?	True