DBNascent | Samples

SRR7184284 Sample ID 2842

**Data sources**
Paper identifier	Zhao2019myod
SRP accession	SRP148464
GEO accession	GSE114657
Samples	SRR7184284

**Technical details**
QC score	2
Replicate	2
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	paired
Raw strandedness	read1 reverse
Reverse complemented?	False
Mapped strandedness	read1 reverse
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	56 Mb
Stranded gene read counts	TXT file	918 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	C2C12
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes	Undifferentiated myoblasts; labeled GRO-seq, but they used 'biotin-11-UTP'
Analysis notes

**Sample metrics**
Sample QC score	2
Sample NRO score	3
Raw read length	50
Read depth after trimming	19,232,151
Duplication proportion	0.5549
Proportion reads mapped	0.8046
Exon/intron ratio	5.3281
Unique read proportion	0.44763

**Bidirectionals**
Total # Tfit bidirectionals	36944
# Promoter Tfit bidirectionals	8182
# Intronic Tfit bidirectionals	14010
# Intergenic Tfit bidirectionals	12288
Total # dREG bidirectionals	28871
# Promoter dREG bidirectionals	8330
# Intronic dREG bidirectionals	10101
# Intergenic dREG bidirectionals	8580
Part of Tfit master merge?	True
Part of dREG master merge?	True