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SRR7184284 Sample ID 2842
| Paper identifier | Zhao2019myod |
| SRP accession | SRP148464 |
| GEO accession | GSE114657 |
| Samples | SRR7184284 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 56 Mb |
| Stranded gene read counts | TXT file | 918 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | C2C12 |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Undifferentiated myoblasts; labeled GRO-seq, but they used 'biotin-11-UTP' |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 19,232,151 |
| Duplication proportion | 0.5549 |
| Proportion reads mapped | 0.8046 |
| Exon/intron ratio | 5.3281 |
| Unique read proportion | 0.44763 |
| Total # Tfit bidirectionals | 36944 |
| # Promoter Tfit bidirectionals | 8182 |
| # Intronic Tfit bidirectionals | 14010 |
| # Intergenic Tfit bidirectionals | 12288 |
| Total # dREG bidirectionals | 28871 |
| # Promoter dREG bidirectionals | 8330 |
| # Intronic dREG bidirectionals | 10101 |
| # Intergenic dREG bidirectionals | 8580 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |