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SRR7184286 Sample ID 2844
| Paper identifier | Zhao2019myod |
| SRP accession | SRP148464 |
| GEO accession | GSE114657 |
| Samples | SRR7184286 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 140 Mb |
| Stranded gene read counts | TXT file | 926 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 5 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | C2C12 |
| Clone/Individual | |
| Strain | |
| Genotype | MyoD -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | Undifferentiated myoblasts; labeled GRO-seq, but they used 'biotin-11-UTP' |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 4 |
| Raw read length | 50 |
| Read depth after trimming | 53,587,241 |
| Duplication proportion | 0.57089 |
| Proportion reads mapped | 0.8441 |
| Exon/intron ratio | 8.07584 |
| Unique read proportion | 0.52245 |
| Total # Tfit bidirectionals | 53556 |
| # Promoter Tfit bidirectionals | 13342 |
| # Intronic Tfit bidirectionals | 19331 |
| # Intergenic Tfit bidirectionals | 18212 |
| Total # dREG bidirectionals | 42657 |
| # Promoter dREG bidirectionals | 7667 |
| # Intronic dREG bidirectionals | 17405 |
| # Intergenic dREG bidirectionals | 14537 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |