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SRR7184287 Sample ID 2845
| Paper identifier | Zhao2019myod |
| SRP accession | SRP148464 |
| GEO accession | GSE114657 |
| Samples | SRR7184287 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | paired |
| Raw strandedness | read1 reverse |
| Reverse complemented? | False |
| Mapped strandedness | read1 reverse |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 81 Mb |
| Stranded gene read counts | TXT file | 922 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 4 Mb |
| dREG bidirectional regions | BED file | 2 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | C2C12 |
| Clone/Individual | |
| Strain | |
| Genotype | MyoD -/- |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | myotube differentiation protocol | -48 hr | 0 hr | 2 day |
| Pipeline info and software versions | |
| Sample notes | Labeled GRO-seq, but they used 'biotin-11-UTP' |
| Analysis notes |
| Sample QC score | 2 |
| Sample NRO score | 3 |
| Raw read length | 50 |
| Read depth after trimming | 35,608,793 |
| Duplication proportion | 0.61775 |
| Proportion reads mapped | 0.8405 |
| Exon/intron ratio | 6.45068 |
| Unique read proportion | 0.43162 |
| Total # Tfit bidirectionals | 50954 |
| # Promoter Tfit bidirectionals | 11569 |
| # Intronic Tfit bidirectionals | 19865 |
| # Intergenic Tfit bidirectionals | 16818 |
| Total # dREG bidirectionals | 39451 |
| # Promoter dREG bidirectionals | 8085 |
| # Intronic dREG bidirectionals | 15984 |
| # Intergenic dREG bidirectionals | 12799 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |