DBNascent | Samples

SRR7290023 Sample ID 1992

**Data sources**
Paper identifier	Oh2021enhancer
SRP accession	SRP150232
GEO accession	GSE115603
Samples	SRR7290023

**Technical details**
QC score	3
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	53 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	959 Kb
dREG bidirectional regions	BED file	281 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
vehicle	ethanol	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previous identifier until 6/16/21 was Oh2020unpublished, documentation reflects that

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	100
Read depth after trimming	42,818,133
Duplication proportion	0.75151
Proportion reads mapped	0.6655
Exon/intron ratio	4.36404
Unique read proportion	0.27131

**Bidirectionals**
Total # Tfit bidirectionals	10997
# Promoter Tfit bidirectionals	4542
# Intronic Tfit bidirectionals	4276
# Intergenic Tfit bidirectionals	1157
Total # dREG bidirectionals	6512
# Promoter dREG bidirectionals	3952
# Intronic dREG bidirectionals	1796
# Intergenic dREG bidirectionals	858
Part of Tfit master merge?	True
Part of dREG master merge?	True