DBNascent | Samples

SRR7290024 Sample ID 1993

**Data sources**
Paper identifier	Oh2021enhancer
SRP accession	SRP150232
GEO accession	GSE115603
Samples	SRR7290024

**Technical details**
QC score	4
Replicate	3
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	46 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	806 Kb
dREG bidirectional regions	BED file	205 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct	siRNA control

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	17-beta-estradiol (100 nM)	-1 hr	0 hr	1 hr

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Previous identifier until 6/16/21 was Oh2020unpublished, documentation reflects that

**Sample metrics**
Sample QC score	4
Sample NRO score	3
Raw read length	100
Read depth after trimming	45,357,569
Duplication proportion	0.80132
Proportion reads mapped	0.6619
Exon/intron ratio	5.30693
Unique read proportion	0.21897

**Bidirectionals**
Total # Tfit bidirectionals	9227
# Promoter Tfit bidirectionals	3629
# Intronic Tfit bidirectionals	3600
# Intergenic Tfit bidirectionals	619
Total # dREG bidirectionals	4751
# Promoter dREG bidirectionals	2858
# Intronic dREG bidirectionals	1308
# Intergenic dREG bidirectionals	568
Part of Tfit master merge?	True
Part of dREG master merge?	True