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SRR7300124 Sample ID 1720
| Paper identifier | Lloret-llinares2018rna |
| SRP accession | SRP150409 |
| GEO accession | GSE115713 |
| Samples | SRR7300124 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 103 Mb |
| Stranded gene read counts | TXT file | 924 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | shRNA control (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | embryoid body differentiation protocol | -3 day | 0 day | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 35,163,624 |
| Duplication proportion | 0.35764 |
| Proportion reads mapped | 0.6874 |
| Exon/intron ratio | 4.5349 |
| Unique read proportion | 0.74062 |
| Total # Tfit bidirectionals | 30406 |
| # Promoter Tfit bidirectionals | 10241 |
| # Intronic Tfit bidirectionals | 10454 |
| # Intergenic Tfit bidirectionals | 6667 |
| Total # dREG bidirectionals | 23525 |
| # Promoter dREG bidirectionals | 6056 |
| # Intronic dREG bidirectionals | 7381 |
| # Intergenic dREG bidirectionals | 6914 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |