DBNascent | Samples

SRR7300125 Sample ID 1721

**Data sources**
Paper identifier	Lloret-llinares2018rna
SRP accession	SRP150409
GEO accession	GSE115713
Samples	SRR7300125

**Technical details**
QC score	1
Replicate	1
Protocol	PRO-seq
Library prep	ligation
Spike-in	None
Single/Paired end	single
Raw strandedness	reverse
Reverse complemented?	True
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	120 Mb
Stranded gene read counts	TXT file	923 Kb
Unstranded bidirectional read counts	TXT file	17 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	1 Mb
All data files	ZIP archive

**Cellular details**
Organism	M. musculus
Sample type	cell line
Cell type	ESC
Clone/Individual	E14
Strain
Genotype	shRNA Rrp40 (stable)
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes

**Sample metrics**
Sample QC score	1
Sample NRO score	2
Raw read length	76
Read depth after trimming	34,550,572
Duplication proportion	0.27148
Proportion reads mapped	0.7203
Exon/intron ratio	4.3966
Unique read proportion	0.81338

**Bidirectionals**
Total # Tfit bidirectionals	35992
# Promoter Tfit bidirectionals	9345
# Intronic Tfit bidirectionals	12790
# Intergenic Tfit bidirectionals	10616
Total # dREG bidirectionals	28058
# Promoter dREG bidirectionals	5752
# Intronic dREG bidirectionals	9580
# Intergenic dREG bidirectionals	9754
Part of Tfit master merge?	True
Part of dREG master merge?	True