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SRR7300127 Sample ID 1723
| Paper identifier | Lloret-llinares2018rna |
| SRP accession | SRP150409 |
| GEO accession | GSE115713 |
| Samples | SRR7300127 |
| QC score | 1 |
| Replicate | 1 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 114 Mb |
| Stranded gene read counts | TXT file | 925 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 3 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | shRNA Rrp40 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | embryoid body differentiation protocol | -3 day | 0 day | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 38,362,116 |
| Duplication proportion | 0.35228 |
| Proportion reads mapped | 0.6977 |
| Exon/intron ratio | 4.42071 |
| Unique read proportion | 0.76448 |
| Total # Tfit bidirectionals | 31727 |
| # Promoter Tfit bidirectionals | 10286 |
| # Intronic Tfit bidirectionals | 11094 |
| # Intergenic Tfit bidirectionals | 7290 |
| Total # dREG bidirectionals | 24861 |
| # Promoter dREG bidirectionals | 6183 |
| # Intronic dREG bidirectionals | 8051 |
| # Intergenic dREG bidirectionals | 7479 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |