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SRR7300128 Sample ID 1724
| Paper identifier | Lloret-llinares2018rna |
| SRP accession | SRP150409 |
| GEO accession | GSE115713 |
| Samples | SRR7300128 |
| QC score | 1 |
| Replicate | 2 |
| Protocol | PRO-seq |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | reverse |
| Reverse complemented? | True |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | experimental |
| Wildtype & Untreated? | False |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 106 Mb |
| Stranded gene read counts | TXT file | 925 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 895 Kb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | ESC |
| Clone/Individual | E14 |
| Strain | |
| Genotype | shRNA Rrp40 (stable) |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| treatment | embryoid body differentiation protocol | -3 day | 0 day | 3 day |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes |
| Sample QC score | 1 |
| Sample NRO score | 2 |
| Raw read length | 76 |
| Read depth after trimming | 37,682,794 |
| Duplication proportion | 0.44298 |
| Proportion reads mapped | 0.7418 |
| Exon/intron ratio | 4.21694 |
| Unique read proportion | 0.74095 |
| Total # Tfit bidirectionals | 25374 |
| # Promoter Tfit bidirectionals | 8315 |
| # Intronic Tfit bidirectionals | 9192 |
| # Intergenic Tfit bidirectionals | 4950 |
| Total # dREG bidirectionals | 20568 |
| # Promoter dREG bidirectionals | 5691 |
| # Intronic dREG bidirectionals | 6589 |
| # Intergenic dREG bidirectionals | 5488 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |