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SRR7458428 Sample ID 2482
| Paper identifier | Tome2018single |
| SRP accession | SRP151707 |
| GEO accession | GSE116472 |
| Samples | SRR7458428 |
| QC score | 4 |
| Replicate | 1 |
| Protocol | PRO-cap variant |
| Library prep | ligation |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 32 Mb |
| Stranded gene read counts | TXT file | 920 Kb |
| Unstranded bidirectional read counts | TXT file | 17 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 1 Mb |
| All data files | ZIP archive | |
| Organism | M. musculus |
| Sample type | cell line |
| Cell type | MEF |
| Clone/Individual | |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | CoPRO - paired end PRO-cap; Capped RNA selection; with PCR amplification |
| Analysis notes | Many pretty dirty, high adapter contamination |
| Sample QC score | 4 |
| Sample NRO score | 5 |
| Raw read length | 76 |
| Read depth after trimming | 32,149,274 |
| Duplication proportion | 0.88836 |
| Proportion reads mapped | 0.8844 |
| Exon/intron ratio | 13.41 |
| Unique read proportion | 0.22247 |
| Total # Tfit bidirectionals | 25687 |
| # Promoter Tfit bidirectionals | 9107 |
| # Intronic Tfit bidirectionals | 9418 |
| # Intergenic Tfit bidirectionals | 5436 |
| Total # dREG bidirectionals | None |
| # Promoter dREG bidirectionals | None |
| # Intronic dREG bidirectionals | None |
| # Intergenic dREG bidirectionals | None |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |