DBNascent | Samples

SRR7519708 Sample ID 2574

**Data sources**
Paper identifier	Viiri2019extensive
SRP accession	SRP153391
GEO accession	GSE117086
Samples	SRR7519708

**Technical details**
QC score	3
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	63 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	1 Mb
dREG bidirectional regions	BED file	412 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	iPSC
Clone/Individual	UTA.11104.EURCC
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	3
Sample NRO score	2
Raw read length	50
Read depth after trimming	14,973,252
Duplication proportion	0.36202
Proportion reads mapped	0.9228
Exon/intron ratio	4.65487
Unique read proportion	0.65481

**Bidirectionals**
Total # Tfit bidirectionals	12591
# Promoter Tfit bidirectionals	4827
# Intronic Tfit bidirectionals	5233
# Intergenic Tfit bidirectionals	1865
Total # dREG bidirectionals	9580
# Promoter dREG bidirectionals	4682
# Intronic dREG bidirectionals	3065
# Intergenic dREG bidirectionals	2007
Part of Tfit master merge?	True
Part of dREG master merge?	True