DBNascent | Samples

SRR7519719 Sample ID 2585

**Data sources**
Paper identifier	Viiri2019extensive
SRP accession	SRP153391
GEO accession	GSE117086
Samples	SRR7519719

**Technical details**
QC score	4
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	27 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	816 Kb
dREG bidirectional regions	BED file	197 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	hepatocyte
Clone/Individual	individual Hu8132
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	4
Sample NRO score	1
Raw read length	50
Read depth after trimming	15,424,607
Duplication proportion	0.82286
Proportion reads mapped	0.8839
Exon/intron ratio	2.87143
Unique read proportion	0.18246

**Bidirectionals**
Total # Tfit bidirectionals	9380
# Promoter Tfit bidirectionals	4395
# Intronic Tfit bidirectionals	3901
# Intergenic Tfit bidirectionals	821
Total # dREG bidirectionals	4589
# Promoter dREG bidirectionals	2914
# Intronic dREG bidirectionals	1451
# Intergenic dREG bidirectionals	463
Part of Tfit master merge?	True
Part of dREG master merge?	True