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SRR7519720 Sample ID 2586
| Paper identifier | Viiri2019extensive |
| SRP accession | SRP153391 |
| GEO accession | GSE117086 |
| Samples | SRR7519720 |
| QC score | 2 |
| Replicate | 2 |
| Protocol | GRO-seq |
| Library prep | circularization |
| Spike-in | None |
| Single/Paired end | single |
| Raw strandedness | forward |
| Reverse complemented? | False |
| Mapped strandedness | forward |
| Timecourse | False |
| Control/Experimental | control |
| Wildtype & Untreated? | True |
| Outlier | No |
| Unusable | No |
| TDF visualization file | TDF file | 82 Mb |
| Stranded gene read counts | TXT file | 1 Mb |
| Unstranded bidirectional read counts | TXT file | 21 Mb |
| Tfit bidirectional regions | BED file | 2 Mb |
| dREG bidirectional regions | BED file | 774 Kb |
| All data files | ZIP archive | |
| Organism | H. sapiens |
| Sample type | primary cell |
| Cell type | hepatocyte |
| Clone/Individual | individual Hu8209 |
| Strain | |
| Genotype | |
| Construct |
| Condition type | Treatment | Start time | End time | Duration |
| no treatment | None | None | None |
| Pipeline info and software versions | |
| Sample notes | |
| Analysis notes | Ran qc redo nextflow |
| Sample QC score | 2 |
| Sample NRO score | 1 |
| Raw read length | 50 |
| Read depth after trimming | 31,675,744 |
| Duplication proportion | 0.61578 |
| Proportion reads mapped | 0.9121 |
| Exon/intron ratio | 2.54462 |
| Unique read proportion | 0.43522 |
| Total # Tfit bidirectionals | 24979 |
| # Promoter Tfit bidirectionals | 8409 |
| # Intronic Tfit bidirectionals | 11114 |
| # Intergenic Tfit bidirectionals | 5072 |
| Total # dREG bidirectionals | 17992 |
| # Promoter dREG bidirectionals | 7482 |
| # Intronic dREG bidirectionals | 7658 |
| # Intergenic dREG bidirectionals | 3220 |
| Part of Tfit master merge? | True |
| Part of dREG master merge? | True |