DBNascent | Samples

SRR7519720 Sample ID 2586

**Data sources**
Paper identifier	Viiri2019extensive
SRP accession	SRP153391
GEO accession	GSE117086
Samples	SRR7519720

**Technical details**
QC score	2
Replicate	2
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	control
Wildtype & Untreated?	True
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	82 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	2 Mb
dREG bidirectional regions	BED file	774 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	primary cell
Cell type	hepatocyte
Clone/Individual	individual Hu8209
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
no treatment		None	None	None

**Extended notes**
Pipeline info and software versions
Sample notes
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	2
Sample NRO score	1
Raw read length	50
Read depth after trimming	31,675,744
Duplication proportion	0.61578
Proportion reads mapped	0.9121
Exon/intron ratio	2.54462
Unique read proportion	0.43522

**Bidirectionals**
Total # Tfit bidirectionals	24979
# Promoter Tfit bidirectionals	8409
# Intronic Tfit bidirectionals	11114
# Intergenic Tfit bidirectionals	5072
Total # dREG bidirectionals	17992
# Promoter dREG bidirectionals	7482
# Intronic dREG bidirectionals	7658
# Intergenic dREG bidirectionals	3220
Part of Tfit master merge?	True
Part of dREG master merge?	True