DBNascent | Samples

SRR7550987 Sample ID 1909

**Data sources**
Paper identifier	Nair2019phase
SRP accession	SRP154849
GEO accession	GSE117493
Samples	SRR7550987

**Technical details**
QC score	1
Replicate	1
Protocol	GRO-seq
Library prep	circularization
Spike-in	None
Single/Paired end	single
Raw strandedness	forward
Reverse complemented?	False
Mapped strandedness	forward
Timecourse	False
Control/Experimental	experimental
Wildtype & Untreated?	False
Outlier	No
Unusable	No

**Downloads**
TDF visualization file	TDF file	140 Mb
Stranded gene read counts	TXT file	1 Mb
Unstranded bidirectional read counts	TXT file	21 Mb
Tfit bidirectional regions	BED file	3 Mb
dREG bidirectional regions	BED file	908 Kb
All data files	ZIP archive

**Cellular details**
Organism	H. sapiens
Sample type	cell line
Cell type	MCF7
Clone/Individual
Strain
Genotype
Construct

**Conditions and treatments**
Condition type	Treatment	Start time	End time	Duration
treatment	2,5-hexanediol (8 percent)	-35 min	-30 min	5 min
treatment	TNF-alpha (100 nM)	-30 min	0 min	30 min

**Extended notes**
Pipeline info and software versions
Sample notes	Methods unclear in spots - treatments may not be accurate
Analysis notes	Ran qc redo nextflow

**Sample metrics**
Sample QC score	1
Sample NRO score	1
Raw read length	100
Read depth after trimming	50,117,111
Duplication proportion	0.43041
Proportion reads mapped	0.8015
Exon/intron ratio	2.23114
Unique read proportion	0.66283

**Bidirectionals**
Total # Tfit bidirectionals	34588
# Promoter Tfit bidirectionals	9272
# Intronic Tfit bidirectionals	16526
# Intergenic Tfit bidirectionals	7553
Total # dREG bidirectionals	20887
# Promoter dREG bidirectionals	6814
# Intronic dREG bidirectionals	9061
# Intergenic dREG bidirectionals	4818
Part of Tfit master merge?	True
Part of dREG master merge?	True